STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03455.1Response regulator of zinc sigma-54-dependent two-component system. (446 aa)    
Predicted Functional Partners:
AKJ02635.1
Response regulator of zinc sigma-54-dependent two-component system.
  
 
 
0.919
AKJ05823.1
Flagellar motor switch protein FliM.
  
 
 0.885
AKJ00529.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.765
AKJ03454.1
Serine/threonine protein kinase.
  
   0.682
AKJ06427.1
Type III secretion system apparatus protein YscQ/HrcQ.
  
 
 0.674
AKJ03453.1
TonB-dependent receptor.
       0.640
AKJ03452.1
Hypothetical protein.
       0.636
AKJ05961.1
Putative SigmaB asociated two-component system sensor protein.
  
 
 0.622
AKJ05826.1
Flagellum-specific ATP synthase FliI.
  
 
 0.600
AKI99786.1
Chemotaxis protein methyltransferase CheR.
  
 
 0.584
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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