STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03464.1Squalene--hopene cyclase. (363 aa)    
Predicted Functional Partners:
AKI98907.1
Phytoene synthase.
 
 
 0.944
AKJ05192.1
Squalene--hopene cyclase.
  
  
 
0.927
AKJ00155.1
Squalene--hopene cyclase.
  
  
 
0.919
AKJ05384.1
Heavy metal RND efflux outer membrane protein, CzcC family.
  
     0.565
AKJ02187.1
Diphosphomevalonate decarboxylase.
   
 
 0.536
AKJ08069.1
Pentalenene synthase.
  
     0.528
AKJ08214.1
Pentalenene synthase.
  
   
 0.491
AKJ03465.1
Hypothetical protein.
 
     0.489
AKI99362.1
Ferric siderophore transport system, periplasmic binding protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
     0.460
AKJ03463.1
Hypothetical protein.
       0.438
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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