Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03465.1Hypothetical protein. (967 aa)    
Predicted Functional Partners:
AKI99700.1
Hypothetical protein.
  
     0.558
AKJ00464.1
Tat.
  
     0.541
AKJ03466.1
Peptidyl-prolyl cis-trans isomerase PpiB.
       0.501
AKJ03464.1
Squalene--hopene cyclase.
 
     0.489
AKJ00779.1
Cell division protein FtsK.
  
     0.463
AKJ05504.1
Hypothetical protein.
  
     0.457
AKJ03257.1
Adventurous gliding motility protein K.
  
   
 0.455
AKJ07626.1
Tryptophan synthase alpha chain.
 
     0.448
AKJ06530.1
Cytochrome c family protein.
  
   
 0.445
AKJ00862.1
Cell division protein FtsK.
  
     0.442
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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