Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKJ03528.1Lipid A export ATP-binding/permease protein MsbA. (745 aa)    
Predicted Functional Partners:
AKJ03527.1
Putative RND efflux membrane fusion protein.
 
 
 0.916
AKJ03526.1
RND efflux membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.880
AKJ01690.1
Hypothetical protein.
 
 
 0.738
AKJ07928.1
Membrane fusion component of tripartite multidrug resistance system.
  
 
 0.685
AKJ03531.1
Malonyl CoA-acyl carrier protein transacylase.
 
  
 0.643
AKJ03529.1
Malonyl CoA-acyl carrier protein transacylase.
 
  
 0.618
AKJ03530.1
Malonyl CoA-acyl carrier protein transacylase.
 
   
 0.599
AKJ01693.1
Lanthionine biosynthesis protein LanM.
 
   
 0.546
AKJ04881.1
Lanthionine biosynthesis protein LanM.
 
   
 0.529
AKJ05795.1
Lanthionine biosynthesis protein LanM.
 
   
 0.523
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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