STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03540.1Hydroxymethylpyrimidine ABC transporter, substrate-binding component. (345 aa)    
Predicted Functional Partners:
AKJ03541.1
Hydroxymethylpyrimidine ABC transporter, transmembrane component.
 
  
 0.962
AKJ03542.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
  
 0.924
AKI99618.1
ABC-type sulfate transporter, permease protein.
 
  
 0.636
AKI99619.1
ABC-type sulfate transporter, ATPase component.
  
  
 0.577
AKI99287.1
Hypothetical protein.
 
     0.552
AKJ02201.1
Hypothetical protein.
  
     0.545
AKJ00385.1
NHL repeat domain protein.
  
     0.538
AKJ02042.1
RTX toxin.
 
     0.538
AKI99817.1
Hypothetical protein.
 
     0.537
AKJ02739.1
Alkanal monooxygenase alpha chain.
  
  
 0.505
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.