STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
furFerric uptake regulation protein FUR; Belongs to the Fur family. (151 aa)    
Predicted Functional Partners:
AKJ03644.1
Thioredoxin.
     
 0.788
AKJ01485.1
Alkyl hydroperoxide reductase protein C.
  
  
 0.773
AKI98530.1
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.648
AKJ05484.1
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.648
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.630
AKJ06926.1
Hypothetical protein.
  
  
 0.595
AKJ05101.1
ABC transporter ATP-binding protein.
  
  
 0.593
AKJ01678.1
O-acetylhomoserine sulfhydrylase.
  
    0.566
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.546
AKJ02174.1
Rubredoxin.
  
  
 0.534
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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