STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03671.1Hypothetical protein. (347 aa)    
Predicted Functional Partners:
AKJ03670.1
Hypothetical protein.
       0.773
AKJ05538.1
RNA lariat debranching enzyme.
  
     0.740
AKJ00391.1
Dihydrosphingosine delta-4 desaturase.
  
     0.715
AKJ07589.1
Sphingosine-1-phosphate lyase.
  
     0.666
AKJ03672.1
Sensory box histidine kinase/response regulator.
       0.610
AKJ01122.1
Alg9 family protein mannosyltransferase.
  
     0.609
AKJ06446.1
Endonuclease/exonuclease/phosphatase family.
  
     0.594
AKJ00711.1
Arginine N-methyltransferase 1.
  
     0.573
AKJ06208.1
Pyridoxal-dependent decarboxylase.
  
     0.564
map-3
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
  
     0.547
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.