STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03772.1Sarcosine oxidase beta subunit. (399 aa)    
Predicted Functional Partners:
AKJ03771.1
Ornithine cyclodeaminase.
 
  
 0.881
AKJ03773.1
Aldehyde dehydrogenase B; Belongs to the aldehyde dehydrogenase family.
  
  
 0.753
AKI98682.1
Hypothetical protein.
  
     0.583
AKI99249.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.557
AKJ04158.1
Sarcosine oxidase alpha subunit.
 
 
 0.538
AKJ03769.1
Hypothetical protein.
       0.499
AKJ03770.1
Hypothetical protein.
       0.499
AKJ08222.1
Ornithine cyclodeaminase.
 
  
 0.482
AKJ07829.1
Hypothetical protein.
  
     0.481
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.463
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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