STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03784.1RNA polymerase, sigma-24 subunit, ECF subfamily. (137 aa)    
Predicted Functional Partners:
AKJ03783.1
ActD.
  
   0.731
AKJ03782.1
Peptidase C14 caspase catalytic subunit p20.
 
     0.724
AKJ06559.1
C4-type zinc finger protein, DksA/TraR family.
  
   
 0.534
AKJ03781.1
Hypothetical protein.
       0.510
AKI99850.1
DNA topoisomerase III.
 
 
 
 0.483
AKJ07365.1
Hypothetical protein.
  
     0.463
AKJ03255.1
Transcriptional regulator, AfsR/DnrI/RedD family.
  
    0.460
AKJ01666.1
Hypothetical protein.
  
     0.459
AKI99188.1
Acetyltransferase, GNAT family.
  
     0.451
AKJ07015.1
Peptidase C14 caspase catalytic subunit p20.
  
     0.451
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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