STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03935.1Transcriptional regulator, TetR family. (208 aa)    
Predicted Functional Partners:
AKJ03936.1
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.665
AKJ07688.1
Hypothetical protein.
  
     0.526
AKJ03157.1
UDP-glucose 4-epimerase.
  
     0.499
AKJ07985.1
Glutamate synthase [NADPH] large chain.
  
     0.490
AKI98858.1
TesB-like acyl-CoA thioesterase 1.
  
   
 0.483
AKI99432.1
Hypothetical protein.
  
     0.479
AKJ03190.1
DNA gyrase subunit A.
  
     0.467
AKJ04621.1
Monooxygenase, flavin-binding family.
 
     0.454
AKJ02797.1
Transcriptional regulator, TetR family.
  
     0.451
AKJ00535.1
Transposase.
  
     0.414
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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