STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03946.1DNA-binding response regulator. (223 aa)    
Predicted Functional Partners:
AKJ03945.1
Sensory box histidine kinase.
 
   0.955
AKJ07310.1
Periplasmic sensor signal transduction histidine kinase.
 
 0.837
AKJ01937.1
Sensor histidine kinase.
 
 0.807
AKJ02691.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
 
   0.796
AKI99787.1
Putative two-component system response regulator.
  
   0.769
AKJ01161.1
Sensor histidine kinase.
  
   0.766
AKJ07998.1
Two component heavy metal response transcriptional regulator, winged helix family.
  
 
   0.765
AKJ06291.1
Sensor histidine kinase.
  
   0.762
AKJ08284.1
Sensory box histidine kinase.
 
 
 0.762
AKJ03209.1
Multi-sensor signal transduction histidine kinase.
 
 
 0.760
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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