STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ04291.1Carbapenem antibiotics biosynthesis protein carD. (420 aa)    
Predicted Functional Partners:
AKJ06901.1
Delta-1-pyrroline-5-carboxylate dehydrogenase.
 
 0.950
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
  
 0.928
AKJ03771.1
Ornithine cyclodeaminase.
  
 
 0.920
AKI98585.1
Proline dehydrogenase.
     
  0.900
AKJ04069.1
WD-repeat protein.
     
  0.900
AKJ04675.1
Proline iminopeptidase; Belongs to the peptidase S33 family.
     
  0.900
AKJ07430.1
Proline iminopeptidase.
     
  0.900
AKJ05273.1
Sodium iodide symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.778
AKJ06789.1
Two-component sensor CbrA: intrcellular carbon:nitrogen balance.
 
  
 0.760
AKJ01038.1
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA.
 
  
 0.572
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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