STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ04299.1TPR domain protein, putative component of TonB system. (1234 aa)    
Predicted Functional Partners:
AKJ04296.1
Putative abductin-like protein.
 
   0.868
AKJ05037.1
TolR-like protein.
 
 
 
 0.838
AKJ02407.1
FHA domain containing protein.
 
   0.794
AKJ07962.1
Adventurous gliding motility protein S.
 
 
   0.793
AKJ05036.1
Adventurous gliding motility protein S.
 
 
 
 0.790
AKJ05539.1
Putative lipoprotein.
  
 
   0.783
AKJ04709.1
Putative lipoprotein.
  
 
   0.782
AKJ05153.1
Putative lipoprotein.
  
 
   0.782
AKJ05323.1
Polyhydroxyalkanoic acid synthase.
  
 
   0.781
AKJ01574.1
Putative abductin-like protein.
  
 
   0.777
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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