STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ04379.1DNA-binding response regulator, LuxR family. (246 aa)    
Predicted Functional Partners:
AKJ04378.1
Sensor protein degS.
 
 0.969
AKJ06230.1
Sensor histidine kinase.
 
 
 0.870
AKJ04651.1
Two-component system sensor kinase.
 
 
 0.866
AKJ02341.1
Adenylate cyclase.
 
 
 0.846
AKJ05961.1
Putative SigmaB asociated two-component system sensor protein.
  
 
 0.570
AKJ04377.1
Hypothetical protein.
       0.536
AKI99496.1
PAS/PAC domain protein.
  
 
 0.506
AKJ00035.1
Hypothetical protein.
 
 
 0.506
AKI99695.1
Putative SigmaB asociated two-component system sensor protein.
   
 
 0.503
AKI99519.1
Sensory box histidine kinase.
  
 
 0.466
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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