STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ06983.1Ferrous iron transport permease EfeU. (616 aa)    
Predicted Functional Partners:
AKJ07614.1
Vitamin B12 ABC transporter, ATPase component BtuD.
   
  
 0.730
tatC
Twin-arginine translocation protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
 
  
 0.721
AKI99138.1
Putative dye-decolorizing peroxidase.
  
  
 0.711
AKJ08461.1
Peroxidase.
  
  
 0.711
AKJ00411.1
Lead, cadmium, zinc and mercury transporting ATPase.
 
  
 0.669
AKJ05323.1
Polyhydroxyalkanoic acid synthase.
  
     0.669
AKJ05153.1
Putative lipoprotein.
  
    0.664
AKJ06010.1
Nicel/Cobalt-specific TonB-dependent outer membrane receptor.
 
  
 0.656
AKJ05539.1
Putative lipoprotein.
  
    0.644
AKJ08427.1
TonB-dependent siderophore receptor.
  
  
 0.640
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.