STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ07856.1RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily. (205 aa)    
Predicted Functional Partners:
AKJ04694.1
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.769
AKJ06948.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.731
AKJ00599.1
RNA polymerase sigma-70 factor, group 3; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.726
AKJ07855.1
Hypothetical protein.
  
   0.697
AKJ06076.1
RNA polymerase sigma-70 factor, ECF family.
  
     0.686
AKJ02335.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.577
AKJ07854.1
Hypothetical protein.
       0.576
AKJ07857.1
Hypothetical protein.
       0.488
AKJ07858.1
Hypothetical protein.
       0.476
AKJ07859.1
ABC transporter, ATP-binding protein.
       0.476
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.