STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ08222.1Ornithine cyclodeaminase. (320 aa)    
Predicted Functional Partners:
AKI99331.1
Serine--glyoxylate aminotransferase.
    
 0.909
AKJ00160.1
Aspartate aminotransferase.
    
 0.908
AKJ00897.1
Aspartate aminotransferase.
    
 0.908
AKJ04412.1
Alanine dehydrogenase; Belongs to the AlaDH/PNT family.
    
  0.903
AKI99249.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.825
AKJ08224.1
Hypothetical protein.
       0.553
AKJ03772.1
Sarcosine oxidase beta subunit.
 
  
 0.482
AKJ08278.1
Agmatinase; Belongs to the arginase family.
 
  
 0.470
AKJ02765.1
Glycine oxidase ThiO.
 
  
 0.466
AKJ04159.1
Sarcosine oxidase beta subunit.
 
  
 0.429
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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