STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900162695_00815Unannotated protein. (317 aa)    
Predicted Functional Partners:
GCA_900162695_00816
Unannotated protein.
 
 0.986
GCA_900162695_00641
Unannotated protein.
 
 
 0.948
GCA_900162695_00817
Unannotated protein.
 
  
 0.943
GCA_900162695_02321
Unannotated protein.
 
 0.890
GCA_900162695_02615
Unannotated protein.
    
 0.858
GCA_900162695_03468
Unannotated protein.
    
 0.858
GCA_900162695_03655
Unannotated protein.
  
 
 0.824
GCA_900162695_02323
Unannotated protein.
 
  
 0.795
GCA_900162695_02679
Unannotated protein.
 
 
 0.749
GCA_900162695_00814
Unannotated protein.
 
 
 0.718
Your Current Organism:
Virgibacillus siamensis
NCBI taxonomy Id: 480071
Other names: JCM 15395, PCU 312, PCU:312, V. siamensis, Virgibacillus siamensis Tanasupawat et al. 2011, strain MS3-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.