STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900162695_01080Unannotated protein. (730 aa)    
Predicted Functional Partners:
GCA_900162695_01086
Unannotated protein.
 0.984
GCA_900162695_01087
Unannotated protein.
 
 0.982
GCA_900162695_01047
Unannotated protein.
 0.980
GCA_900162695_00567
Unannotated protein.
 0.978
GCA_900162695_03622
Unannotated protein.
 0.974
GCA_900162695_01088
Unannotated protein.
 
 0.934
GCA_900162695_00444
Unannotated protein.
 
 
 0.922
GCA_900162695_01081
Unannotated protein.
 
  
0.920
GCA_900162695_01083
Unannotated protein.
 
 
 0.916
GCA_900162695_01085
Unannotated protein.
 
  
 0.901
Your Current Organism:
Virgibacillus siamensis
NCBI taxonomy Id: 480071
Other names: JCM 15395, PCU 312, PCU:312, V. siamensis, Virgibacillus siamensis Tanasupawat et al. 2011, strain MS3-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.