STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000439375_00027Unannotated protein. (705 aa)    
Predicted Functional Partners:
GCA_000439375_01950
Unannotated protein.
 
 0.983
GCA_000439375_01635
Unannotated protein.
 0.904
GCA_000439375_00935
Unannotated protein.
 
 0.833
GCA_000439375_01411
Unannotated protein.
 
 
  
 0.793
GCA_000439375_01637
Unannotated protein.
  
 0.724
GCA_000439375_02398
Unannotated protein.
 
0.686
GCA_000439375_00150
Unannotated protein.
 
      0.685
GCA_000439375_01925
Unannotated protein.
 
 
 0.685
GCA_000439375_00603
Unannotated protein.
 
0.623
GCA_000439375_01636
Unannotated protein.
    
 0.605
Your Current Organism:
Tatumella saanichensis
NCBI taxonomy Id: 480813
Other names: CCUG 55408, DSM 19846, T. saanichensis, Tatumella saanichensis Tracz et al. 2015, Tatumella sp. NML 06-3099, strain NML 06-3099
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.