STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000439375_00334Unannotated protein. (330 aa)    
Predicted Functional Partners:
GCA_000439375_00333
Unannotated protein.
 
  
 0.958
GCA_000439375_00740
Unannotated protein.
     
 0.953
GCA_000439375_00313
Unannotated protein.
    
  0.896
GCA_000439375_02768
Unannotated protein.
 
  
 0.855
GCA_000439375_00332
Unannotated protein.
  
  
 0.832
GCA_000439375_00335
Unannotated protein.
  
  
 0.828
GCA_000439375_01008
Unannotated protein.
 
      0.819
GCA_000439375_00330
Unannotated protein.
    
 0.759
GCA_000439375_00331
Unannotated protein.
  
  
 0.747
GCA_000439375_00336
Unannotated protein.
  
    0.652
Your Current Organism:
Tatumella saanichensis
NCBI taxonomy Id: 480813
Other names: CCUG 55408, DSM 19846, T. saanichensis, Tatumella saanichensis Tracz et al. 2015, Tatumella sp. NML 06-3099, strain NML 06-3099
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.