STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000439375_00664Unannotated protein. (540 aa)    
Predicted Functional Partners:
GCA_000439375_01300
Unannotated protein.
  
 
 0.930
GCA_000439375_01520
Unannotated protein.
  
 
 0.909
GCA_000439375_00743
Unannotated protein.
   
 
 0.817
GCA_000439375_03003
Unannotated protein.
  
 0.815
GCA_000439375_00385
Unannotated protein.
    
 0.798
GCA_000439375_00350
Unannotated protein.
  
 
 0.797
GCA_000439375_01627
Unannotated protein.
  
 
 0.797
GCA_000439375_01748
Unannotated protein.
  
 
 0.797
GCA_000439375_00349
Unannotated protein.
   
 
 0.794
GCA_000439375_01615
Unannotated protein.
    
 0.790
Your Current Organism:
Tatumella saanichensis
NCBI taxonomy Id: 480813
Other names: CCUG 55408, DSM 19846, T. saanichensis, Tatumella saanichensis Tracz et al. 2015, Tatumella sp. NML 06-3099, strain NML 06-3099
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.