STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000439375_01177Unannotated protein. (248 aa)    
Predicted Functional Partners:
GCA_000439375_01984
Unannotated protein.
 
 0.933
GCA_000439375_01476
Unannotated protein.
    
  0.903
GCA_000439375_01127
Unannotated protein.
     
 0.899
GCA_000439375_01133
Unannotated protein.
  
 
 0.785
GCA_000439375_01134
Unannotated protein.
  
 
 0.785
GCA_000439375_00948
Unannotated protein.
      0.766
GCA_000439375_00116
Unannotated protein.
 
      0.719
GCA_000439375_03147
Unannotated protein.
  
 
  0.702
GCA_000439375_01347
Unannotated protein.
  
 
 0.586
GCA_000439375_01024
Unannotated protein.
      0.575
Your Current Organism:
Tatumella saanichensis
NCBI taxonomy Id: 480813
Other names: CCUG 55408, DSM 19846, T. saanichensis, Tatumella saanichensis Tracz et al. 2015, Tatumella sp. NML 06-3099, strain NML 06-3099
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.