STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000439375_01691Unannotated protein. (348 aa)    
Predicted Functional Partners:
GCA_000439375_00716
Unannotated protein.
 
 
 0.990
GCA_000439375_02018
Unannotated protein.
   
 
 0.984
GCA_000439375_02017
Unannotated protein.
   
 
  0.965
GCA_000439375_00329
Unannotated protein.
   
 
 0.785
GCA_000439375_01690
Unannotated protein.
      0.783
GCA_000439375_00328
Unannotated protein.
   
  
 0.561
GCA_000439375_00045
Unannotated protein.
   
    0.554
GCA_000439375_02570
Unannotated protein.
    
 0.533
GCA_000439375_00424
Unannotated protein.
   
  
 0.531
GCA_000439375_02780
Unannotated protein.
   
  
 0.494
Your Current Organism:
Tatumella saanichensis
NCBI taxonomy Id: 480813
Other names: CCUG 55408, DSM 19846, T. saanichensis, Tatumella saanichensis Tracz et al. 2015, Tatumella sp. NML 06-3099, strain NML 06-3099
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.