STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000439375_01879Unannotated protein. (375 aa)    
Predicted Functional Partners:
GCA_000439375_00994
Unannotated protein.
    
   0.928
GCA_000439375_01931
Unannotated protein.
  
     0.681
GCA_000439375_01878
Unannotated protein.
       0.592
GCA_000439375_01875
Unannotated protein.
  
  
 0.577
GCA_000439375_01877
Unannotated protein.
       0.573
GCA_000439375_01874
Unannotated protein.
     
 0.561
GCA_000439375_01876
Unannotated protein.
     
 0.520
GCA_000439375_00197
Unannotated protein.
  
     0.485
GCA_000439375_02762
Unannotated protein.
  
     0.449
GCA_000439375_00741
Unannotated protein.
 
   
 0.431
Your Current Organism:
Tatumella saanichensis
NCBI taxonomy Id: 480813
Other names: CCUG 55408, DSM 19846, T. saanichensis, Tatumella saanichensis Tracz et al. 2015, Tatumella sp. NML 06-3099, strain NML 06-3099
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.