STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
caiD_2Carnitinyl-CoA dehydratase. (261 aa)    
Predicted Functional Partners:
rpfC
Sensory/regulatory protein RpfC.
    
 0.918
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
    
 0.918
barA_1
Signal transduction histidine-protein kinase BarA.
    
 0.918
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
    
 0.918
CRL13209.1
GAF domain protein.
    
  0.877
CRL14350.1
GAF domain protein.
    
  0.877
CRL16346.1
Blue-light-activated protein.
    
  0.877
barA_2
Signal transduction histidine-protein kinase BarA.
    
  0.877
ppsE
Beta-ketoacyl-acyl-carrier-protein synthase I.
  
 0.856
gcdC
Glutaconyl-CoA decarboxylase subunit gamma.
 
  0.816
Your Current Organism:
Phaeobacter italicus
NCBI taxonomy Id: 481446
Other names: Aquamarinicola italica, CCUG 55857, CECT 7645, DSM 26436, LMG 24365, LMG:24365, Nautella italica, Nautella italica Vandecandelaere et al. 2009, P. italicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.