STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmF_3Cytochrome c-type biogenesis protein CcmF. (666 aa)    
Predicted Functional Partners:
cycY_3
Cytochrome c biogenesis protein CycY.
 
  
 0.977
ccmH_3
Cytochrome c-type biogenesis protein CcmH precursor; Possible subunit of a heme lyase.
 
  
 0.971
CRL14607.1
Formate-dependent nitrite reductase complex subunit NrfG.
 
 
 0.956
ccmE
Heme chaperone CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
 
 
 0.919
cycY_2
Cytochrome c biogenesis protein CycY.
 
  
 0.906
cycY_1
Cytochrome c biogenesis protein CycY.
 
  
 0.886
ccmH_1
Cytochrome c-type biogenesis protein CcmH precursor.
 
  
 0.877
ccmH_2
Cytochrome c-type biogenesis protein CcmH precursor; Possible subunit of a heme lyase.
 
  
 0.877
ccmC
Cytochrome c-type biogenesis protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
 
  
 0.869
ccmB
Cytochrome c-type biogenesis protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
 
  
 0.821
Your Current Organism:
Phaeobacter italicus
NCBI taxonomy Id: 481446
Other names: Aquamarinicola italica, CCUG 55857, CECT 7645, DSM 26436, LMG 24365, LMG:24365, Nautella italica, Nautella italica Vandecandelaere et al. 2009, P. italicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.