Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRL13590.1 | CRL14627.1 | NIT7645_00603 | NIT7645_01658 | Hypothetical protein. | Hypothetical protein. | 0.571 |
CRL14625.1 | CRL14626.1 | NIT7645_01656 | NIT7645_01657 | Hypothetical protein. | Hypothetical protein. | 0.709 |
CRL14625.1 | CRL14627.1 | NIT7645_01656 | NIT7645_01658 | Hypothetical protein. | Hypothetical protein. | 0.793 |
CRL14626.1 | CRL14625.1 | NIT7645_01657 | NIT7645_01656 | Hypothetical protein. | Hypothetical protein. | 0.709 |
CRL14626.1 | CRL14627.1 | NIT7645_01657 | NIT7645_01658 | Hypothetical protein. | Hypothetical protein. | 0.588 |
CRL14627.1 | CRL13590.1 | NIT7645_01658 | NIT7645_00603 | Hypothetical protein. | Hypothetical protein. | 0.571 |
CRL14627.1 | CRL14625.1 | NIT7645_01658 | NIT7645_01656 | Hypothetical protein. | Hypothetical protein. | 0.793 |
CRL14627.1 | CRL14626.1 | NIT7645_01658 | NIT7645_01657 | Hypothetical protein. | Hypothetical protein. | 0.588 |
CRL14627.1 | CRL16042.1 | NIT7645_01658 | NIT7645_03102 | Hypothetical protein. | Hypothetical protein. | 0.850 |
CRL14627.1 | msrA3 | NIT7645_01658 | NIT7645_02786 | Hypothetical protein. | Peptide methionine sulfoxide reductase MsrA 3; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.535 |
CRL14627.1 | nrdJ | NIT7645_01658 | NIT7645_01433 | Hypothetical protein. | Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.850 |
CRL14627.1 | nrdZ | NIT7645_01658 | NIT7645_00215 | Hypothetical protein. | Ribonucleoside-diphosphate reductase NrdZ; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.850 |
CRL14627.1 | ribBA | NIT7645_01658 | NIT7645_00300 | Hypothetical protein. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.591 |
CRL14627.1 | secB | NIT7645_01658 | NIT7645_02888 | Hypothetical protein. | Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.585 |
CRL14627.1 | selD | NIT7645_01658 | NIT7645_00984 | Hypothetical protein. | Selenide, water dikinase. | 0.600 |
CRL16042.1 | CRL14627.1 | NIT7645_03102 | NIT7645_01658 | Hypothetical protein. | Hypothetical protein. | 0.850 |
CRL16042.1 | ribBA | NIT7645_03102 | NIT7645_00300 | Hypothetical protein. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.615 |
msrA3 | CRL14627.1 | NIT7645_02786 | NIT7645_01658 | Peptide methionine sulfoxide reductase MsrA 3; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Hypothetical protein. | 0.535 |
nrdJ | CRL14627.1 | NIT7645_01433 | NIT7645_01658 | Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Hypothetical protein. | 0.850 |
nrdJ | nrdZ | NIT7645_01433 | NIT7645_00215 | Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Ribonucleoside-diphosphate reductase NrdZ; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.924 |
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