Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRL16472.1 | alaS_2 | NIT7645_03539 | NIT7645_01277 | Cytochrome c2 precursor. | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.992 |
CRL16472.1 | barA_1 | NIT7645_03539 | NIT7645_01791 | Cytochrome c2 precursor. | Signal transduction histidine-protein kinase BarA. | 0.689 |
CRL16472.1 | degQ | NIT7645_03539 | NIT7645_02040 | Cytochrome c2 precursor. | Periplasmic pH-dependent serine endoprotease DegQ precursor. | 0.624 |
CRL16472.1 | glpK | NIT7645_03539 | NIT7645_01776 | Cytochrome c2 precursor. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.713 |
CRL16472.1 | ppsE | NIT7645_03539 | NIT7645_02596 | Cytochrome c2 precursor. | Beta-ketoacyl-acyl-carrier-protein synthase I. | 0.746 |
CRL16643.1 | alaS_2 | NIT7645_03711 | NIT7645_01277 | Soluble hydrogenase 42 kDa subunit. | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.666 |
CRL16643.1 | degQ | NIT7645_03711 | NIT7645_02040 | Soluble hydrogenase 42 kDa subunit. | Periplasmic pH-dependent serine endoprotease DegQ precursor. | 0.625 |
alaS_2 | CRL16472.1 | NIT7645_01277 | NIT7645_03539 | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Cytochrome c2 precursor. | 0.992 |
alaS_2 | CRL16643.1 | NIT7645_01277 | NIT7645_03711 | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Soluble hydrogenase 42 kDa subunit. | 0.666 |
alaS_2 | degQ | NIT7645_01277 | NIT7645_02040 | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Periplasmic pH-dependent serine endoprotease DegQ precursor. | 0.623 |
alaS_2 | glpK | NIT7645_01277 | NIT7645_01776 | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.744 |
barA_1 | CRL16472.1 | NIT7645_01791 | NIT7645_03539 | Signal transduction histidine-protein kinase BarA. | Cytochrome c2 precursor. | 0.689 |
barA_1 | degQ | NIT7645_01791 | NIT7645_02040 | Signal transduction histidine-protein kinase BarA. | Periplasmic pH-dependent serine endoprotease DegQ precursor. | 0.674 |
barA_1 | ppsE | NIT7645_01791 | NIT7645_02596 | Signal transduction histidine-protein kinase BarA. | Beta-ketoacyl-acyl-carrier-protein synthase I. | 0.891 |
barA_1 | rseP | NIT7645_01791 | NIT7645_01176 | Signal transduction histidine-protein kinase BarA. | Regulator of sigma E protease. | 0.493 |
crcB | degQ | NIT7645_02042 | NIT7645_02040 | Camphor resistance protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. | Periplasmic pH-dependent serine endoprotease DegQ precursor. | 0.561 |
crcB | rarA | NIT7645_02042 | NIT7645_02041 | Camphor resistance protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. | Replication-associated recombination protein A. | 0.722 |
crcB | rplQ | NIT7645_02042 | NIT7645_02039 | Camphor resistance protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. | 50S ribosomal protein L17. | 0.545 |
degQ | CRL16472.1 | NIT7645_02040 | NIT7645_03539 | Periplasmic pH-dependent serine endoprotease DegQ precursor. | Cytochrome c2 precursor. | 0.624 |
degQ | CRL16643.1 | NIT7645_02040 | NIT7645_03711 | Periplasmic pH-dependent serine endoprotease DegQ precursor. | Soluble hydrogenase 42 kDa subunit. | 0.625 |
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