Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRL14556.1 | galE | NIT7645_01586 | NIT7645_02959 | UDP-glucose 4-epimerase. | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | 0.678 |
CRL14556.1 | gtaB | NIT7645_01586 | NIT7645_02958 | UDP-glucose 4-epimerase. | UTP--glucose-1-phosphate uridylyltransferase. | 0.635 |
CRL14556.1 | manC1 | NIT7645_01586 | NIT7645_01702 | UDP-glucose 4-epimerase. | Mannose-1-phosphate guanylyltransferase 1; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.678 |
CRL14556.1 | rffG | NIT7645_01586 | NIT7645_01569 | UDP-glucose 4-epimerase. | dTDP-glucose 4,6-dehydratase 2. | 0.603 |
CRL14556.1 | tuaD | NIT7645_01586 | NIT7645_01585 | UDP-glucose 4-epimerase. | UDP-glucose 6-dehydrogenase TuaD. | 0.962 |
CRL15902.1 | galE | NIT7645_02960 | NIT7645_02959 | Hypothetical protein. | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | 0.789 |
CRL15902.1 | gtaB | NIT7645_02960 | NIT7645_02958 | Hypothetical protein. | UTP--glucose-1-phosphate uridylyltransferase. | 0.650 |
fcl | galE | NIT7645_01698 | NIT7645_02959 | GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | 0.662 |
fcl | gtaB | NIT7645_01698 | NIT7645_02958 | GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. | UTP--glucose-1-phosphate uridylyltransferase. | 0.635 |
fcl | manC1 | NIT7645_01698 | NIT7645_01702 | GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. | Mannose-1-phosphate guanylyltransferase 1; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.699 |
fcl | rffG | NIT7645_01698 | NIT7645_01569 | GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. | dTDP-glucose 4,6-dehydratase 2. | 0.580 |
fcl | tuaD | NIT7645_01698 | NIT7645_01585 | GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. | UDP-glucose 6-dehydrogenase TuaD. | 0.801 |
galE | CRL14556.1 | NIT7645_02959 | NIT7645_01586 | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | UDP-glucose 4-epimerase. | 0.678 |
galE | CRL15902.1 | NIT7645_02959 | NIT7645_02960 | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | Hypothetical protein. | 0.789 |
galE | fcl | NIT7645_02959 | NIT7645_01698 | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. | 0.662 |
galE | glmU_1 | NIT7645_02959 | NIT7645_00781 | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | Bifunctional protein GlmU; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.625 |
galE | gtaB | NIT7645_02959 | NIT7645_02958 | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | UTP--glucose-1-phosphate uridylyltransferase. | 0.990 |
galE | manC1 | NIT7645_02959 | NIT7645_01702 | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | Mannose-1-phosphate guanylyltransferase 1; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.631 |
galE | mro | NIT7645_02959 | NIT7645_00532 | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | Aldose 1-epimerase precursor. | 0.703 |
galE | rffG | NIT7645_02959 | NIT7645_01569 | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | dTDP-glucose 4,6-dehydratase 2. | 0.743 |
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