STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRL16080.1Hypothetical protein. (190 aa)    
Predicted Functional Partners:
CRL16081.1
Polyhydroxyalkanoate depolymerase, intracellular.
       0.622
gcvT_5
Aminomethyltransferase; Belongs to the GcvT family.
  
  
  0.586
gcvT_6
Aminomethyltransferase; Belongs to the GcvT family.
  
  
  0.557
gltB
Glutamate synthase [NADPH] large chain precursor.
     
 0.534
CRL13812.1
Hypothetical protein.
  
     0.478
CRL15756.1
FlgN protein.
  
     0.468
CRL15820.1
Hypothetical protein.
  
     0.468
CRL16409.1
Ribosomal protein L11 methyltransferase.
  
     0.457
CRL13010.1
Putative permease, DMT superfamily.
  
     0.443
CRL15819.1
Hypothetical protein.
  
     0.411
Your Current Organism:
Phaeobacter italicus
NCBI taxonomy Id: 481446
Other names: Aquamarinicola italica, CCUG 55857, CECT 7645, DSM 26436, LMG 24365, LMG:24365, Nautella italica, Nautella italica Vandecandelaere et al. 2009, P. italicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.