Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRL16341.1 | CRL16343.1 | NIT7645_03407 | NIT7645_03409 | Alanine dehydrogenase. | Alpha-ribazole phosphatase. | 0.800 |
CRL16341.1 | alr | NIT7645_03407 | NIT7645_00849 | Alanine dehydrogenase. | Alanine racemase, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.868 |
CRL16341.1 | gcvP_1 | NIT7645_03407 | NIT7645_02617 | Alanine dehydrogenase. | Glycine dehydrogenase [decarboxylating]; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.442 |
CRL16341.1 | gcvP_2 | NIT7645_03407 | NIT7645_03637 | Alanine dehydrogenase. | Glycine dehydrogenase [decarboxylating]; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.442 |
CRL16341.1 | gltB | NIT7645_03407 | NIT7645_02791 | Alanine dehydrogenase. | Glutamate synthase [NADPH] large chain precursor. | 0.560 |
CRL16341.1 | gstB_4 | NIT7645_03407 | NIT7645_03408 | Alanine dehydrogenase. | Glutathione S-transferase GST-6.0. | 0.775 |
CRL16341.1 | lysDH | NIT7645_03407 | NIT7645_03406 | Alanine dehydrogenase. | Lysine 6-dehydrogenase. | 0.944 |
CRL16341.1 | nadE | NIT7645_03407 | NIT7645_00037 | Alanine dehydrogenase. | Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.712 |
CRL16341.1 | putA | NIT7645_03407 | NIT7645_00940 | Alanine dehydrogenase. | Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.450 |
CRL16341.1 | tpa_4 | NIT7645_03407 | NIT7645_02931 | Alanine dehydrogenase. | Taurine--pyruvate aminotransferase. | 0.428 |
CRL16343.1 | CRL16341.1 | NIT7645_03409 | NIT7645_03407 | Alpha-ribazole phosphatase. | Alanine dehydrogenase. | 0.800 |
CRL16343.1 | gstB_4 | NIT7645_03409 | NIT7645_03408 | Alpha-ribazole phosphatase. | Glutathione S-transferase GST-6.0. | 0.654 |
CRL16343.1 | lysDH | NIT7645_03409 | NIT7645_03406 | Alpha-ribazole phosphatase. | Lysine 6-dehydrogenase. | 0.658 |
alr | CRL16341.1 | NIT7645_00849 | NIT7645_03407 | Alanine racemase, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Alanine dehydrogenase. | 0.868 |
alr | nadE | NIT7645_00849 | NIT7645_00037 | Alanine racemase, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.441 |
alr | putA | NIT7645_00849 | NIT7645_00940 | Alanine racemase, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.493 |
alr | tpa_4 | NIT7645_00849 | NIT7645_02931 | Alanine racemase, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Taurine--pyruvate aminotransferase. | 0.662 |
gcvP_1 | CRL16341.1 | NIT7645_02617 | NIT7645_03407 | Glycine dehydrogenase [decarboxylating]; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Alanine dehydrogenase. | 0.442 |
gcvP_1 | gcvP_2 | NIT7645_02617 | NIT7645_03637 | Glycine dehydrogenase [decarboxylating]; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glycine dehydrogenase [decarboxylating]; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.999 |
gcvP_1 | gltB | NIT7645_02617 | NIT7645_02791 | Glycine dehydrogenase [decarboxylating]; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glutamate synthase [NADPH] large chain precursor. | 0.970 |
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