STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRL16595.1TRAP-type C4-dicarboxylate transport system, small permease component. (182 aa)    
Predicted Functional Partners:
siaT_10
Neu5Ac permease.
 
  0.996
siaP_4
Neu5Ac-binding protein.
 
 
  0.992
CRL16597.1
Putative transcription regulator, contains HTH domain (MarR family).
 
     0.854
kipI
Sporulation inhibitor KipI.
       0.662
kipA
KipI antagonist.
       0.661
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.660
CRL13131.1
Putative transcription regulator, contains HTH domain (MarR family).
 
     0.595
siaT_2
Neu5Ac permease.
  
  0.510
siaT_3
Neu5Ac permease.
  
  0.510
siaT_4
Neu5Ac permease.
  
  0.510
Your Current Organism:
Phaeobacter italicus
NCBI taxonomy Id: 481446
Other names: Aquamarinicola italica, CCUG 55857, CECT 7645, DSM 26436, LMG 24365, LMG:24365, Nautella italica, Nautella italica Vandecandelaere et al. 2009, P. italicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.