STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbB_2Biopolymer transport protein ExbB. (217 aa)    
Predicted Functional Partners:
CRL16600.1
TonB system transport protein ExbD.
 
 
 0.996
CRL16598.1
Hypothetical protein; TonB family C-terminal domain.
 
 
 0.993
CRL16599.1
Biopolymer transport protein ExbD/TolR.
 
 
 0.991
CRL16602.1
Hypothetical protein.
 
     0.963
exbD
Biopolymer transport protein ExbD.
 
 
 0.943
CRL15597.1
Hypothetical protein.
  
 
 0.873
tdhA
TonB-dependent heme receptor A precursor.
 
  
 0.859
hemS
Hemin transport protein HemS.
 
  
 0.718
hmuT
Hemin-binding periplasmic protein HmuT precursor.
 
  
 0.663
hmuV
Hemin import ATP-binding protein HmuV; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
   
 0.633
Your Current Organism:
Phaeobacter italicus
NCBI taxonomy Id: 481446
Other names: Aquamarinicola italica, CCUG 55857, CECT 7645, DSM 26436, LMG 24365, LMG:24365, Nautella italica, Nautella italica Vandecandelaere et al. 2009, P. italicus
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.