STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erfKUncharacterized protein, ErfK family. (298 aa)    
Predicted Functional Partners:
cof
HAD superfamily hydrolase.
  
     0.610
Minf_1824
Conserved hypothetical protein.
  
     0.565
Minf_2471
Conserved hypothetical protein.
  
   
 0.563
Minf_0360
Conserved hypothetical protein.
  
     0.547
Minf_1477
Conserved hypothetical protein.
  
     0.539
Minf_1894
Conserved hypothetical protein.
  
     0.491
lrp-2
Transcriptional regulator, Lrp/AsnC family.
  
     0.447
Minf_1104
Glycosyl hydrolase, family 57.
  
     0.432
Minf_1530
Conserved hypothetical protein.
  
     0.429
Minf_1241
Conserved hypothetical protein.
  
     0.424
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.