STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltDNADPH-dependent glutamate synthase beta chain or related oxidoreductase. (448 aa)    
Predicted Functional Partners:
pyrD-2
Dihydroorotate dehydrogenase fused to Fe-S-cluster domain.
 0.999
gltB
Glutamate synthase domain large chain.
 
 0.999
pyrC
Dihydroorotase.
 
 
  0.976
upp
Uracil phosphoribosyltransferase; Belongs to the UPRTase family.
     
  0.900
cumB-2
Cytosine/adenosine deaminase.
     
  0.900
argE-2
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase.
  
 
  0.896
nuoF-2
NAD-dependent formate dehydrogenase beta subunit.
    
 0.887
nuoF
NADH-ubiquinone oxidoreductase chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
    
 0.861
fdsA
NAD-dependent formate dehydrogenase alpha subunit.
    
 0.856
ubiB
2-polyprenylphenol hydroxylase or related flavodoxin oxidoreductase.
 
 
 0.842
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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