STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaE-2D-glycero-beta-D-manno-heptose 7-phosphate kinase. (335 aa)    
Predicted Functional Partners:
rfaE
ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase.
 
     0.976
Minf_0958
D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase; Belongs to the gmhB family.
 
   
 0.954
gmhA
Phosphoheptose isomerase.
   
 0.895
rfaF
ADP-heptose:LPS heptosyltransferase.
 
  
 0.789
rfaF-3
ADP-heptose:LPS heptosyltransferase.
 
  
 0.789
rfaF-2
ADP-heptose:LPS heptosyltransferase.
 
  
 0.786
gmhA-2
Phosphoheptose isomerase.
 
   
 0.759
kdsB
CMP-2-keto-3-deoxyoctulosonic acid synthetase; Belongs to the KdsB family.
     
 0.615
pheA
Prephenate dehydratase.
       0.566
kdsA
3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; Belongs to the KdsA family.
     
 0.553
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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