Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gcdMethanol dehydrogenase large subunit protein. (611 aa)    
Predicted Functional Partners:
pmoC
Particulate methane monoxygenase gamma (PmoC) subunit.
     
 0.945
pmoC-3
Particulate methane monoxygenase gamma (PmoC) subunit.
     
 0.944
pmoC-2
Particulate methane monoxygenase gamma (PmoC) subunit.
     
 0.936
pmoC-4
Particulate methane monoxygenase gamma (PmoC) subunit.
     
 0.934
mauB
Methylamine dehydrogenase heavy chain M.
 
 
  0.924
Minf_2000
Methylamine dehydrogenase, L chain.
  
  
  0.921
pmoB-3
Particulate methane monoxygenase alpha (PmoB) subunit.
     
 0.917
pmoA-3
Particulate methane monoxygenase beta (PmoA) subunit.
     
 0.906
pmoB
Particulate methane monoxygenase alpha (PmoB) subunit.
     
  0.900
pmoA
Particulate methane monoxygenase beta (PmoA) subunit.
     
  0.900
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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