Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gabT4-aminobutyrate aminotransferase or related aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (451 aa)    
Predicted Functional Partners:
acoA
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
     
 0.555
Minf_0057
Acyl-CoA reductase, LuxC.
 
 
 0.515
gltB
Glutamate synthase domain large chain.
      
 0.489
gadB
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 
 0.477
putA
NAD-dependent Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.451
putA-2
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.451
serA
Phosphoglycerate dehydrogenase and ACT domains; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.450
acoB
Pyruvate/2-oxoglutarate dehydrogenase complex, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
 0.448
Minf_0717
Proline dehydrogenase and delta 1-pyrroline-5-carboxylate dehydrogenase.
  
  
 0.429
dadA
Glycine/D-amino acid oxidase (deaminating).
 
  
 0.427
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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