STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbD-4Biopolymer transport protein. (148 aa)    
Predicted Functional Partners:
tolQ-4
Biopolymer transport protein.
 
   0.932
tonB-4
Periplasmic protein TonB; Links inner and outer membranes.
 
   0.889
tolQ-6
Biopolymer transport protein.
  
   0.823
tolQ-2
Biopolymer transport protein ExbB/TolQ.
  
   0.806
tolQ-5
Biopolymer transport protein, MotA/TolQ/ExbB family.
  
   0.805
tolQ-3
MotA/TolQ/ExbB proton channel family protein.
  
   0.804
exbD-2
Biopolymer transport protein ExbD/TolR.
  
     0.750
tolQ
MotA/TolQ/ExbB proton channel family protein.
  
   0.744
exbD-3
Biopolymer transport protein ExbD/TolR.
  
     0.728
exbD-7
Biopolymer transport protein.
  
     0.720
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.