STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Minf_1981Ribosome-associated protein Y (PSrp-1). (115 aa)    
Predicted Functional Partners:
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.892
rpmI
Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
   
   0.892
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
   0.888
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
   0.885
rpmA
Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.882
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.882
rpmH
Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
    
 
 0.880
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.879
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.876
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.875
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.