Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Minf_1985Predicted deacetylase. (249 aa)    
Predicted Functional Partners:
rfaG-12
Glycosyltransferase.
 
     0.867
rfaG-11
PHP family phosphoesterase fused to glycosyltransferase.
 
     0.857
wecD-2
Acetyltransferase, GNAT family.
 
     0.820
Minf_1983
Oligoendopeptidase F.
       0.776
Minf_1989
Protein of unknown function, DUF1597 family.
 
     0.609
acrA-4
Membrane-fusion protein.
  
     0.580
rfaG-7
Glycosyltransferase.
  
     0.580
Minf_1241
Conserved hypothetical protein.
  
    0.570
Minf_2437
Conserved hypothetical protein.
  
     0.531
Minf_1840
Alpha/beta hydrolase.
  
     0.517
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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