Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mauBMethylamine dehydrogenase heavy chain M. (359 aa)    
Predicted Functional Partners:
Minf_2000
Methylamine dehydrogenase, L chain.
 
 
  0.998
mauE
Methylamine utilisation protein MauE.
 
   
 0.981
trxA-4
Methylamine utilization protein mauD, thioredoxin.
 
   
 0.979
gcd
Methanol dehydrogenase large subunit protein.
 
 
  0.924
mauG
Cytochrome c peroxidase.
  
 
 0.907
Minf_2001
Cytochrome c, class I.
 
     0.875
cirA
Outer membrane receptor protein, mostly Fe transport.
  
    0.620
cirA-10
Outer membrane receptor protein, mostly Fe transport.
  
    0.588
cirA-16
Outer membrane receptor protein, mostly Fe transport.
  
    0.585
cirA-14
Outer membrane receptor protein, mostly Fe transport.
  
    0.569
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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