Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Minf_2000Methylamine dehydrogenase, L chain. (157 aa)    
Predicted Functional Partners:
mauB
Methylamine dehydrogenase heavy chain M.
 
 
  0.998
Minf_2001
Cytochrome c, class I.
 
     0.939
gcd
Methanol dehydrogenase large subunit protein.
  
  
  0.921
mauE
Methylamine utilisation protein MauE.
 
     0.884
trxA-4
Methylamine utilization protein mauD, thioredoxin.
 
     0.883
Minf_1232
Uncharacterized conserved protein.
 
 
   0.768
mauG
Cytochrome c peroxidase.
   
   0.768
Minf_0195
Uncharacterized conserved protein.
   
   0.712
Minf_0610
SBP56, 56kDa selenium binding protein.
   
   0.702
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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