STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Minf_2001Cytochrome c, class I. (152 aa)    
Predicted Functional Partners:
Minf_2000
Methylamine dehydrogenase, L chain.
 
     0.942
hcaD-2
NAD(FAD)-dependent dehydrogenase.
   
 
 0.891
trxA-4
Methylamine utilization protein mauD, thioredoxin.
 
 
 
 0.886
ccoN
Cbb3-type cytochrome oxidase, subunit 1.
 
 
 0.882
mauB
Methylamine dehydrogenase heavy chain M.
 
    0.876
ccoO
Cbb3-type cytochrome oxidase, cytochrome c subunit.
  
 
 0.874
mauE
Methylamine utilisation protein MauE.
 
     0.872
hybA
Anaerobic dehydrogenase and Fe-S-cluster domain.
  
  
 0.502
cccA-3
Cytochrome c family protein.
 
  
 0.476
cccA-6
Cytochrome c family protein.
 
  
 0.454
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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