Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
Minf_2001Cytochrome c, class I. (152 aa)    
Predicted Functional Partners:
hybA
Anaerobic dehydrogenase and Fe-S-cluster domain.
   
 
 0.971
Minf_2000
Methylamine dehydrogenase, L chain.
 
     0.939
ccoN
Cbb3-type cytochrome oxidase, subunit 1.
 
 
 0.908
ccoO
Cbb3-type cytochrome oxidase, cytochrome c subunit.
  
 
 0.902
trxA-4
Methylamine utilization protein mauD, thioredoxin.
 
 
 
 0.886
hcaD-2
NAD(FAD)-dependent dehydrogenase.
   
 
 0.878
mauB
Methylamine dehydrogenase heavy chain M.
 
     0.875
mauE
Methylamine utilisation protein MauE.
 
     0.871
Minf_1962
Cytochrome c3.
   
 
 0.792
Minf_0485
Polysulphide reductase.
   
 
 0.696
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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