Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
smtA-17SAM-dependent methyltransferase. (337 aa)    
Predicted Functional Partners:
glk
Glucokinase; Belongs to the bacterial glucokinase family.
       0.773
tonB-5
Periplasmic protein TonB; Links inner and outer membranes.
       0.608
nrfG-3
TPR repeats containing protein.
  
     0.511
Minf_1645
Predicted membrane protein.
  
     0.491
Minf_2002
Hypothetical protein.
       0.490
Minf_1380
Conserved hypothetical protein.
  
     0.468
virB4
Type IV secretory pathway, VirB4 component.
  
     0.465
Minf_1488
Conserved hypothetical protein.
  
     0.455
Minf_1808
Endopolygalacturonase.
  
     0.442
nrfG
TPR repeats containing protein.
 
     0.403
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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