Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
tonB-5Periplasmic protein TonB; Links inner and outer membranes. (221 aa)    
Predicted Functional Partners:
tolQ-5
Biopolymer transport protein, MotA/TolQ/ExbB family.
 
 
 0.918
glk
Glucokinase; Belongs to the bacterial glucokinase family.
       0.608
smtA-17
SAM-dependent methyltransferase.
       0.608
tolQ-4
Biopolymer transport protein.
  
   0.607
cirA
Outer membrane receptor protein, mostly Fe transport.
 
 
 0.596
tolQ-3
MotA/TolQ/ExbB proton channel family protein.
  
   0.564
tolQ-6
Biopolymer transport protein.
  
   0.561
exbD-4
Biopolymer transport protein.
  
   0.537
exbD-7
Biopolymer transport protein.
  
   0.500
Minf_2006
Conserved hypothetical protein.
       0.489
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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