Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slp-6Starvation-inducible outer membrane lipoprotein. (191 aa)    
Predicted Functional Partners:
gadB
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
   
 
 0.652
kefB
Na+/H+ antiporter.
      
 0.618
kefB-2
Na+/H+ antiporter.
      
 0.618
tolC-7
Outer membrane protein.
  
   
 0.613
potE
Amino acid transporter.
   
  
 0.612
potE-2
Amino acid transporter.
   
  
 0.612
Minf_0964
Peptidylarginine deiminase or related enzyme; Belongs to the agmatine deiminase family.
      
 0.608
slp-5
Starvation-inducible outer membrane lipoprotein.
 
    
0.585
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
  
   
 0.569
tolC
Heavy metal RND efflux outer membrane protein, CzcC family.
      
 0.540
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.