STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fixC-2Dehydrogenase (flavoprotein). (339 aa)    
Predicted Functional Partners:
Minf_2050
Conserved hypothetical protein.
 
     0.928
bcsA
Naringenin-chalcone synthase.
 
  
 0.904
fixA
Electron transfer flavoprotein, beta subunit.
  
 
 0.788
fixX
Ferredoxin-like protein.
  
 
 0.756
Minf_1312
Methylthioribose kinase.
  
     0.661
pspE
Rhodanese-related sulfurtransferase.
  
     0.628
fixB
Electron transfer flavoprotein, alpha subunit.
  
 
 0.585
glpG-2
Membrane associated serine protease, Rhomboid family.
  
     0.565
erg9-2
Phytoene/squalene synthetase fused to flavin containing amine oxidoreductase.
  
  
 0.557
ccoN
Cbb3-type cytochrome oxidase, subunit 1.
  
     0.556
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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