Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppDABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily. (291 aa)    
Predicted Functional Partners:
dppC-2
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 0.999
dppB-2
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.998
appF
ABC-type oligopeptide transport system, ATPase component.
 
 
0.994
dppC
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.993
ddpA
ABC-type dipeptide transport system, periplasmic component.
 
 0.987
dppB
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 
 0.952
ccmA
ABC-type multidrug transport system, ATPase component.
     
0.897
oppA
ABC-type oligopeptide transport system, periplasmic component.
 
  
 0.874
Minf_2134
SAM-dependent methyltransferase.
       0.772
malK
ABC-type molybdate transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
    
0.558
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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